JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRH_chr19_55176247_55214501	0/0	c0082	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0083	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0084	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0085	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0086	3348	1	0	0	0	1	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0087	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0088	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0089	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0090	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0091	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0092	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0093	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0094	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0095	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0096	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0097	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0098	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0099	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0100	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0101	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0102	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0103	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0104	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0105	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0106	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0107	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0108	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0109	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0110	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0111	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0112	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0113	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0114	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0115	3348	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0116	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0117	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0118	3348	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0119	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0120	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0121	3348	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0122	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0123	3348	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRJ_chr11_47975559_48175839	0/0	c0001	4014	45	13	5	23	1	3	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0002	4014	37	7	9	14	3	4	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/1	c0003	4014	35	5	7	18	1	3	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0004	4014	24	10	6	1	4	3	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0005	4014	10	3	2	1	1	3	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	1/0	c0006	4014	9	7	0	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0007	4014	8	8	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0008	4014	6	6	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839