JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRJ_chr11_47975559_48175839	0/0	c0009	4014	5	4	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0010	4014	5	5	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0011	4014	4	3	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0012	4014	4	4	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0013	4014	3	3	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0014	4014	3	0	2	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0015	4014	2	0	0	2	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0016	4014	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0017	4014	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0018	4014	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0019	4014	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0020	4014	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0021	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0022	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0023	4014	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0024	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0025	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0026	4014	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0027	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0028	4014	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	c0029	4035	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRK_chr6_127963785_128525599	0/0	c0001	4323	21	12	4	2	1	2	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0002	4323	6	1	2	1	0	2	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0003	4323	6	6	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/1	c0004	4323	5	2	2	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0005	4323	4	4	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0006	4323	2	1	0	1	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0007	4323	2	2	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0008	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0009	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0010	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0011	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0012	4323	1	0	0	0	1	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0013	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	c0014	4323	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRM_chr18_7562316_8411856	0/0	c0001	4398	18	12	2	3	1	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0002	4398	12	6	2	3	1	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0003	4398	11	9	2	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0004	4398	8	7	0	1	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0005	4398	7	7	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0006	4398	6	5	1	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0007	4398	2	2	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0008	4398	2	2	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0009	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0010	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0011	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0012	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0013	4398	1	0	0	1	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0014	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0015	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856