JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRM_chr18_7562316_8411856	0/0	c0016	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0017	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0018	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0019	4398	1	0	1	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0020	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0021	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	c0022	4398	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRN_chr2_219284623_219314401	1/1	c0001	2940	307	61	73	131	12	28	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0002	2940	38	10	0	23	0	5	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0003	2940	30	0	6	13	2	9	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0004	2940	19	19	0	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0005	2940	9	0	0	9	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0006	2940	2	0	0	2	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0007	2940	2	0	0	0	0	2	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0008	2940	1	0	0	1	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0009	2940	1	0	0	1	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0010	2940	1	0	1	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0011	2940	1	0	0	1	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0012	2940	1	1	0	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0013	2940	1	0	0	1	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	c0014	2940	1	1	0	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRO_chr12_15317508_15603331	1/0	c0001	3651	62	15	10	26	3	7	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/1	c0002	3651	50	34	6	5	0	4	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0003	3651	19	5	2	9	1	2	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0004	3651	14	4	4	4	0	2	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0005	3651	5	4	1	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0006	3651	4	0	0	4	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0007	3651	3	0	0	2	1	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0008	3651	2	2	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0009	3651	2	0	0	2	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0010	3651	1	0	0	0	0	1	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0011	3651	1	0	0	0	1	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	c0012	3651	1	0	1	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRQ_chr12_80439235_80685273	0/1	c0001	6900	32	3	11	10	2	5	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	1/0	c0002	6900	10	0	4	5	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0003	6900	8	0	1	7	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0004	6900	5	3	1	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0005	6900	5	5	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0006	6900	5	0	4	0	1	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0007	6900	4	3	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0008	6900	4	3	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0009	6900	4	3	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0010	6900	4	1	1	0	1	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0011	6900	3	0	0	3	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0012	6900	3	0	0	2	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0013	6900	3	1	2	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0014	6900	3	0	3	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0015	6900	3	0	0	3	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0016	6900	3	1	0	2	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0017	6900	3	3	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273