JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRQ_chr12_80439235_80685273	0/0	c0018	6900	2	1	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0019	6900	2	0	1	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0020	6900	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0021	6900	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0022	6892	2	0	2	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0023	6900	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0024	6900	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0025	6900	2	0	2	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0026	6900	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0027	6900	2	1	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0028	6900	2	0	2	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0029	6900	1	0	0	0	1	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0030	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0031	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0032	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0033	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0034	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0035	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0036	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0037	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0038	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0039	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0040	6900	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0041	6900	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0042	6900	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0043	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0044	6900	1	0	0	0	1	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0045	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0046	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0047	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0048	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0049	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0050	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0051	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0052	6900	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0053	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0054	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0055	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0056	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0057	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0058	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0059	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0060	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0061	6900	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0062	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0063	6900	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0064	6892	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0065	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0066	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0067	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273