JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASB12_chrX_64219194_64235607	0/0	c0005	957	2	1	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0006	957	1	0	0	0	0	1	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0007	957	1	0	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0008	957	1	0	1	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0009	957	1	0	0	0	0	1	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0010	957	1	0	0	1	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0011	957	1	1	0	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0012	957	1	1	0	0	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB13_chr10_5633867_5671595	1/1	c0001	837	406	68	84	191	17	44	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0002	837	15	12	2	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0003	837	5	5	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0004	837	4	4	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0005	837	3	3	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0006	837	2	0	0	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0007	837	2	0	0	2	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0008	837	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0009	837	1	0	0	0	1	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0010	837	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0011	837	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0012	837	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0013	837	1	0	0	1	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0014	837	1	0	1	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0015	837	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB13_chr10_5633867_5671595	0/0	c0016	837	1	1	0	0	0	0	copy fasta	ASB13	chr10	5633867	5671595
ASB14_chr3_57263342_57297685	1/1	c0001	1764	315	79	71	103	14	46	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0002	1764	11	9	2	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0003	1764	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0004	1764	1	0	0	0	0	1	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0005	1764	1	0	0	1	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0006	1764	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0007	1764	1	0	0	0	0	1	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0008	1764	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0009	1764	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0010	1764	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0011	1764	1	1	0	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB14_chr3_57263342_57297685	0/0	c0012	1764	1	0	1	0	0	0	copy fasta	ASB14	chr3	57263342	57297685
ASB15_chr7_123596821_123644481	0/1	c0001	1767	142	26	29	58	5	23	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0002	1767	102	36	11	43	4	8	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	1/0	c0003	1767	69	15	10	35	3	5	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0004	1767	14	3	3	3	1	4	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0005	1767	13	1	7	5	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0006	1767	8	0	0	7	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0007	1767	7	0	2	5	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0008	1767	6	0	0	6	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0009	1767	3	2	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0010	1767	3	3	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0011	1767	2	2	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0012	1767	2	0	0	2	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0013	1767	2	1	0	0	0	1	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0014	1767	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481