JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRQ_chr12_80439235_80685273	0/0	c0068	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0069	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0070	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0071	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0072	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0073	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0074	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0075	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0076	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0077	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0078	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0079	6900	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0080	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0081	6900	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	c0082	6900	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRR_chr12_70633079_70925738	0/1	c0001	1974	97	10	16	55	3	12	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	1/0	c0002	1974	60	45	6	5	1	2	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0003	1974	8	8	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0004	1974	5	2	1	0	0	2	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0005	1974	5	3	2	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0006	1974	4	4	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0007	1974	4	0	1	0	1	2	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0008	1974	3	1	2	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0009	1974	3	3	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0010	1974	2	1	1	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0011	1974	2	2	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0012	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0013	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0014	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0015	1974	1	0	0	1	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0016	1974	1	0	1	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0017	1974	1	0	0	1	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0018	1974	1	0	0	0	1	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0019	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0020	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0021	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	c0022	1974	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRS_chr19_5200508_5345812	0/1	c0001	5847	94	5	32	37	7	12	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0002	5847	36	1	17	8	1	9	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0003	5847	15	4	3	5	0	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0004	5847	10	7	1	0	0	2	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0005	5847	8	1	6	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0006	5847	8	8	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0007	5847	8	0	5	0	2	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0008	5847	6	0	1	0	2	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0009	5847	5	1	2	0	2	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0010	5847	5	5	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0011	5847	4	4	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0012	5847	4	4	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0013	5847	4	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812