JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
PTPRS_chr19_5200508_5345812	0/0	c0014	5847	4	4	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0015	5847	3	3	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0016	5847	3	3	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0017	5847	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0018	5847	2	0	0	2	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0019	5847	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0020	5847	2	0	0	0	2	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0021	5847	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0022	5847	2	1	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0023	5847	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0024	5847	2	2	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0025	5847	2	1	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0026	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0027	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0028	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0029	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0030	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0031	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0032	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0033	5847	1	0	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0034	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0035	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0036	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0037	5847	1	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0038	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0039	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0040	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0041	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0042	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0043	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0044	5847	1	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0045	5847	1	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0046	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	1/0	c0047	5847	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0048	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0049	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0050	5847	1	0	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0051	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0052	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0053	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0054	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0055	5847	1	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0056	5847	1	0	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0057	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0058	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0059	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0060	5847	1	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0061	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0062	5847	1	0	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0063	5847	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812