JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRS_chr19_5200508_5345812	0/0	c0064	5847	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0065	5847	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	c0066	5847	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRT_chr20_42067756_43194906	0/0	c0001	4326	10	2	3	2	2	1	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0002	4326	8	7	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0003	4326	7	4	1	1	0	1	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0004	4326	6	1	4	1	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0005	4326	2	0	0	0	0	2	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0006	4326	2	2	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0007	4326	2	2	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0008	4326	2	1	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0009	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0010	4326	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0011	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0012	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0013	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0014	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0015	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0016	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0017	4326	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0018	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0019	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0020	4326	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0021	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0022	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0023	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0024	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0025	4326	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0026	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0027	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0028	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0029	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0030	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	c0031	4326	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRU_chr1_29231522_29331800	1/0	c0001	4311	96	36	27	22	6	4	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/1	c0002	4311	42	4	8	22	1	6	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0003	4311	40	7	2	21	0	10	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0004	4311	35	6	5	19	1	4	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0005	4311	13	2	1	0	1	9	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0006	4311	8	4	1	1	0	2	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0007	4311	7	6	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0008	4311	6	3	0	1	2	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0009	4311	5	0	0	5	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0010	4311	5	5	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0011	4311	4	0	3	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0012	4311	3	2	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0013	4311	3	0	2	0	1	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0014	4311	2	2	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0015	4311	2	0	0	2	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0016	4311	2	1	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800