JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRU_chr1_29231522_29331800	0/0	c0017	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0018	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0019	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0020	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0021	4311	1	0	0	0	0	1	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0022	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0023	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0024	4311	1	0	0	0	0	1	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0025	4311	1	0	0	0	0	1	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0026	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0027	4311	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0028	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0029	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0030	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0031	4311	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0032	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0033	4311	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0034	4311	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0035	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0036	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0037	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0038	4311	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	c0039	4311	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRZ1_chr7_121868161_122067036	0/0	c0001	6945	82	37	22	12	1	10	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0002	6948	58	1	13	34	1	9	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0003	6945	45	0	9	34	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0004	6948	29	3	7	18	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0005	6948	24	14	2	6	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	1/0	c0006	6948	14	2	1	10	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0007	6948	13	0	0	13	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0008	6948	5	4	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0009	6948	4	0	3	0	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0010	6948	3	0	0	3	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0011	6945	3	0	0	2	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0012	6945	3	1	0	0	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0013	6948	2	1	0	0	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0014	6948	2	0	0	2	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0015	6948	2	2	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0016	6948	2	2	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0017	6945	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0018	6945	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0019	6945	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0020	6948	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0021	6948	1	0	0	0	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0022	6948	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0023	6948	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0024	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0025	6948	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0026	6948	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/1	c0027	6948	1	0	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036