JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRZ1_chr7_121868161_122067036	0/0	c0028	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0029	6945	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0030	6945	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0031	6948	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0032	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0033	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0034	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0035	6948	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0036	6945	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	c0037	6948	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTRH1_chr9_127708807_127720663	1/1	c0001	645	332	90	67	119	12	42	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0002	645	8	0	3	5	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0003	645	3	0	0	3	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0004	645	2	0	2	0	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0005	645	1	0	0	1	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0006	645	1	0	1	0	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	c0007	645	1	0	1	0	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH2_chr17_59692308_59712430	1/1	c0001	540	369	98	62	150	10	47	copy fasta	PTRH2	chr17	59692308	59712430
PTRH2_chr17_59692308_59712430	0/0	c0002	540	1	0	0	0	0	1	copy fasta	PTRH2	chr17	59692308	59712430
PTRHD1_chr2_24784728_24798391	1/1	c0001	423	403	84	84	185	14	34	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	c0002	423	2	0	0	0	0	2	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	c0003	423	2	0	0	0	2	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	c0004	423	1	0	0	1	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTS_chr11_112221428_112238973	1/1	c0001	438	385	77	74	172	14	46	copy fasta	PTS	chr11	112221428	112238973
PTS_chr11_112221428_112238973	0/0	c0002	438	18	16	2	0	0	0	copy fasta	PTS	chr11	112221428	112238973
PTS_chr11_112221428_112238973	0/0	c0003	438	1	1	0	0	0	0	copy fasta	PTS	chr11	112221428	112238973
PTTG1IP2_chr7_90464639_90518397	1/1	c0001	465	360	81	67	163	11	36	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0002	465	15	1	5	1	1	7	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0003	465	5	4	1	0	0	0	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0004	465	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0005	465	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0006	465	1	0	1	0	0	0	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	c0007	465	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP_chr21_44844598_44878690	1/1	c0001	543	439	96	77	198	18	48	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	c0002	543	3	0	3	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	c0003	543	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	c0004	543	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1_chr5_160416855_160433739	1/1	c0001	609	454	84	80	228	18	42	copy fasta	PTTG1	chr5	160416855	160433739
PTTG1_chr5_160416855_160433739	0/0	c0002	609	12	10	2	0	0	0	copy fasta	PTTG1	chr5	160416855	160433739
PTTG1_chr5_160416855_160433739	0/0	c0003	609	1	1	0	0	0	0	copy fasta	PTTG1	chr5	160416855	160433739
PTTG1_chr5_160416855_160433739	0/0	c0004	609	1	1	0	0	0	0	copy fasta	PTTG1	chr5	160416855	160433739
PTTG2_chr4_37955398_37966128	0/0	c0001	576	220	30	45	123	9	13	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	c0002	576	127	38	11	62	2	14	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	1/1	c0003	576	83	25	25	9	5	17	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	c0004	576	4	0	0	4	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	c0005	576	2	2	0	0	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	c0006	576	1	1	0	0	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	c0007	576	1	0	1	0	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTX3_chr3_157431850_157448633	0/0	c0001	1146	336	55	52	183	11	35	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	1/1	c0002	1146	96	20	24	32	6	12	copy fasta	PTX3	chr3	157431850	157448633