JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTX3_chr3_157431850_157448633	0/0	c0003	1146	19	13	0	6	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0004	1146	5	0	5	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0005	1146	3	3	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0006	1146	2	2	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0007	1146	2	0	2	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0008	1146	1	0	0	0	1	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0009	1146	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0010	1146	1	0	0	0	0	1	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0011	1146	1	0	1	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0012	1146	1	0	0	1	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0013	1146	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0014	1146	1	0	1	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0015	1146	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	c0016	1146	1	0	1	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX4_chr16_1480886_1493944	1/0	c0001	1437	164	7	47	67	12	30	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0002	1437	125	3	8	104	1	9	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0003	1437	37	24	4	5	1	3	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0004	1437	30	8	7	15	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/1	c0005	1437	19	12	4	0	0	2	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0006	1437	14	12	2	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0007	1437	9	0	0	9	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0008	1437	4	4	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0009	1437	4	3	1	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0010	1437	4	4	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0011	1437	3	0	2	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0012	1437	2	0	1	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0013	1437	2	2	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0014	1437	2	2	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0015	1437	2	2	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0016	1437	2	0	0	0	0	2	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0018	1437	1	0	0	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0019	1437	1	0	1	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0020	1437	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0021	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0022	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0023	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0025	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0026	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0027	1437	1	0	1	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0028	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0029	1437	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0030	1437	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0031	1437	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0032	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0033	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0034	1437	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	c0035	1437	1	0	0	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PUDP_chrX_7043920_7153153	0/0	c0001	687	101	32	14	44	2	9	copy fasta	PUDP	chrX	7043920	7153153