JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PUDP_chrX_7043920_7153153	1/1	c0002	687	79	14	17	33	7	6	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0003	687	67	4	11	41	2	9	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0004	687	5	0	0	5	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0005	687	2	2	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0006	687	2	0	0	0	2	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0007	687	1	1	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0008	687	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0009	687	1	1	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	c0010	686	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUF60_chr8_143811344_143834315	0/1	c0001	1680	387	87	76	166	14	43	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0002	1680	3	0	0	3	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0003	1680	2	2	0	0	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0004	1680	2	0	2	0	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0005	1680	1	0	0	1	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0006	1680	1	1	0	0	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	c0007	1680	1	0	0	0	0	1	copy fasta	PUF60	chr8	143811344	143834315
PUM1_chr1_30926506_31070717	1/0	c0001	3567	196	50	36	82	8	19	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/1	c0002	3567	118	18	25	53	3	18	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0003	3567	3	3	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0004	3567	3	3	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0005	3567	3	2	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0006	3567	3	3	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0007	3567	2	0	0	0	2	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0008	3567	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0009	3567	1	0	0	0	0	1	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0010	3567	1	0	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0011	3567	1	0	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0012	3567	1	1	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	c0013	3567	1	0	0	0	1	0	copy fasta	PUM1	chr1	30926506	31070717
PUM2_chr2_20243737_20355844	1/1	c0001	3195	347	87	64	142	12	40	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	c0002	3195	9	7	2	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	c0003	3195	1	0	0	1	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	c0004	3195	1	0	0	1	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM3_chr9_2799152_2849095	0/1	c0001	1947	156	22	25	83	3	22	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	1/0	c0002	1947	111	13	25	56	5	11	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0003	1947	36	15	2	14	0	5	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0004	1947	31	1	5	23	1	1	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0005	1947	29	19	4	3	3	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0006	1947	10	0	6	4	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0007	1947	9	0	0	9	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0008	1947	5	5	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0009	1947	4	0	0	4	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0010	1947	3	3	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0011	1947	3	3	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0012	1947	3	2	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0013	1947	2	0	1	0	0	1	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0014	1947	2	0	2	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0015	1947	2	2	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0016	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0017	1947	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095