JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PUM3_chr9_2799152_2849095	0/0	c0018	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0019	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0020	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0021	1947	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0022	1947	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0023	1947	1	0	1	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0024	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0025	1947	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0026	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0027	1947	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0028	1947	1	0	1	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	c0029	1947	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PURA_chr5_140109109_140130619	1/1	c0001	969	188	61	46	47	12	20	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	c0002	969	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	c0003	969	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURB_chr7_44871299_44890530	1/0	c0001	939	219	50	29	127	0	12	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/1	c0002	939	182	31	53	53	14	30	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	c0003	939	6	6	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	c0004	939	2	0	0	2	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	c0005	939	1	0	0	1	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	c0006	939	1	0	0	1	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	c0007	939	1	1	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURG_chr8_31025850_31038356	1/1	c0001	1044	391	95	63	174	18	39	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	c0002	1044	6	0	5	0	0	1	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	c0003	1044	2	0	0	2	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	c0004	1044	1	0	0	1	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	c0005	1044	1	0	0	1	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	c0006	1044	1	1	0	0	0	0	copy fasta	PURG	chr8	31025850	31038356
PUS10_chr2_60935223_61023255	0/1	c0001	1590	122	45	35	22	9	10	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	1/0	c0002	1590	117	29	26	44	5	12	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	c0003	1590	5	5	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	c0004	1590	1	1	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	c0005	1590	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS1_chr12_131924276_131950896	1/1	c0001	1284	361	95	72	140	14	38	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0002	1284	5	0	0	3	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0003	1284	4	0	4	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0004	1284	2	0	2	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0005	1284	2	0	0	2	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0006	1284	2	0	0	0	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0007	1284	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0008	1284	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0009	1284	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0010	1284	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0011	1284	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	c0012	1284	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS3_chr11_125888485_125908206	0/0	c0001	1446	203	36	38	100	8	21	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	1/0	c0002	1446	88	33	9	36	3	6	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0003	1446	72	2	17	40	1	12	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/1	c0004	1446	66	20	12	28	2	3	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0005	1446	4	0	0	4	0	0	copy fasta	PUS3	chr11	125888485	125908206