JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PUS3_chr11_125888485_125908206	0/0	c0006	1446	4	3	0	0	0	1	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0007	1446	3	0	0	3	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0008	1446	2	2	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0009	1446	2	0	0	0	0	2	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0010	1446	1	0	1	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0011	1446	1	0	0	0	0	1	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0012	1446	1	1	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0013	1446	1	1	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0014	1446	1	0	1	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	c0015	1446	1	0	0	1	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS7L_chr12_43713992_43763790	1/0	c0001	2106	182	41	30	73	9	28	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/1	c0002	2106	97	36	21	31	1	7	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0003	2106	5	5	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0004	2106	3	3	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0005	2106	2	0	0	0	1	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0006	2106	2	0	0	2	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0007	2106	2	0	1	0	1	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0008	2106	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0009	2106	2	0	0	0	2	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0010	2106	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0011	2106	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0012	2106	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0013	1906	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0014	2106	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0015	2106	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0016	2106	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0017	2106	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	c0018	2106	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7_chr7_105451503_105527271	1/1	c0001	1986	332	83	62	130	13	42	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0002	1986	5	0	0	5	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0003	1986	4	3	0	0	1	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0004	1986	4	4	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0005	1986	2	2	0	0	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0006	1986	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0007	1986	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	c0008	1986	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUSL1_chr1_1303597_1316677	1/1	c0001	912	299	74	55	120	10	38	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0002	913	18	1	3	13	0	1	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0003	912	11	9	2	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0004	912	7	6	1	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0005	912	6	0	2	0	2	2	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0006	912	2	0	1	1	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0007	912	2	0	0	2	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0008	913	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0009	912	1	0	0	1	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0010	912	1	0	0	0	0	1	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0011	912	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0012	912	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0013	912	1	0	0	1	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	c0014	912	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677