JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASB15_chr7_123596821_123644481	0/0	c0015	1767	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0016	1767	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0017	1767	1	1	0	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0018	1767	1	0	1	0	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0019	1767	1	0	0	0	1	0	copy fasta	ASB15	chr7	123596821	123644481
ASB15_chr7_123596821_123644481	0/0	c0020	1767	1	0	0	1	0	0	copy fasta	ASB15	chr7	123596821	123644481
ASB16_chr17_44165704_44184084	0/0	c0001	1362	155	37	20	87	3	8	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/1	c0002	1362	113	16	21	45	8	22	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0003	1362	29	9	5	14	0	1	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	1/0	c0004	1362	18	0	6	7	1	3	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0005	1362	10	10	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0006	1362	9	9	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0007	1362	5	5	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0008	1362	3	0	0	3	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0009	1362	3	0	3	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0010	1362	2	0	0	0	0	2	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0011	1362	2	0	1	0	1	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0012	1362	2	2	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0013	1362	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0015	1362	1	0	1	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0016	1362	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0017	1362	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0018	1362	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0019	1362	1	1	0	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0020	1362	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0021	1362	1	0	0	0	1	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0022	1362	1	0	0	1	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	c0023	1362	1	0	1	0	0	0	copy fasta	ASB16	chr17	44165704	44184084
ASB17_chr1_75913873_75937404	1/1	c0001	888	256	78	58	81	11	26	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0002	888	149	20	20	85	5	19	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0003	888	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0004	888	1	0	1	0	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0005	888	1	0	0	0	0	1	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0006	888	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0007	888	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0008	888	1	0	1	0	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	c0009	888	1	0	0	1	0	0	copy fasta	ASB17	chr1	75913873	75937404
ASB18_chr2_236188459_236269406	1/0	c0001	1401	80	10	14	37	7	11	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0002	1401	66	2	17	34	5	8	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0003	1401	30	20	4	0	2	4	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0004	1401	13	4	4	0	2	3	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0005	1401	9	8	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0006	1401	8	7	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0007	1401	7	7	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0008	1401	6	6	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0009	1401	4	4	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0010	1401	4	1	3	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0011	1401	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0012	1401	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406