JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PWP2_chr21_44102399_44136181	0/0	c0001	2760	36	22	4	10	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0002	2760	28	14	3	11	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0003	2760	5	5	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0004	2760	2	2	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0005	2760	2	1	1	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0006	2760	2	2	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0007	2760	2	2	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0008	2760	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0009	2760	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0010	2760	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0011	2760	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0012	2760	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0013	2760	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	c0014	2760	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWWP2A_chr5_160086339_160124450	1/0	c0001	2268	317	77	54	141	10	34	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0002	2268	31	2	3	24	0	2	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/1	c0003	2268	12	0	5	0	3	3	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0004	2268	5	5	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0005	2268	5	5	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0006	2268	3	0	1	0	1	1	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0007	2268	2	0	0	2	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0008	2268	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0009	2268	1	0	1	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0010	2268	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0011	2268	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0012	2268	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0013	2268	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0014	2268	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0015	2268	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	c0016	2250	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2B_chr10_132392200_132422859	0/0	c0001	1773	118	16	22	59	9	12	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	1/0	c0002	1773	89	18	20	35	2	13	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0003	1773	38	0	9	20	2	7	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0004	1773	31	11	10	10	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0005	1773	28	22	6	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0006	1773	23	7	9	1	3	3	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0007	1773	8	8	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/1	c0008	1773	7	0	5	0	0	1	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0009	1773	5	5	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0010	1773	4	4	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0011	1773	4	0	0	4	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0012	1773	4	4	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0013	1773	3	0	0	3	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0014	1773	2	0	0	0	0	2	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0015	1773	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0016	1773	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0017	1773	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0018	1773	1	0	0	0	0	1	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0019	1773	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0020	1773	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859