JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PWWP2B_chr10_132392200_132422859	0/0	c0021	1773	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0022	1773	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0023	1773	1	0	0	0	0	1	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	c0024	1773	1	0	1	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP3A_chr19_1349959_1383429	0/0	c0001	2133	131	49	26	36	4	16	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0002	2133	112	6	22	60	3	21	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	1/1	c0003	2133	106	16	9	67	4	8	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0004	2133	8	4	2	0	1	1	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0005	2133	7	7	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0006	2133	7	0	0	7	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0007	2133	7	0	0	7	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0008	2133	3	0	0	3	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0009	2133	3	3	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0010	2133	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0011	2133	2	2	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0012	2133	2	0	1	0	1	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0013	2133	2	1	0	0	1	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0014	2133	2	0	0	0	2	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0015	2133	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0016	2133	2	0	0	0	0	2	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0017	2133	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0018	2133	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0019	2133	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0020	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0021	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0022	2133	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0023	2133	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0024	2133	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0025	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0026	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0027	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0028	2133	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0029	2133	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	c0030	2133	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3B_chrX_106163305_106213956	1/1	c0001	2091	224	59	43	87	9	24	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0002	2091	7	0	0	7	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0003	2091	6	6	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0004	2091	3	1	2	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0005	2091	3	3	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0006	2091	1	0	1	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0007	2091	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0008	2091	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0009	2091	1	1	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	c0010	2091	1	0	1	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP4_chrX_153261152_153284145	0/0	c0001	6186	22	0	9	8	1	4	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0002	6186	12	5	6	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0003	6186	11	4	3	1	1	2	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0004	6186	11	0	2	6	0	3	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0005	6186	8	4	2	1	1	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0006	6186	7	7	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145