JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PWWP4_chrX_153261152_153284145	0/0	c0057	6180	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0058	6186	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0059	6189	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0060	6183	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	c0061	6186	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PXDC1_chr6_3717619_3756713	0/1	c0001	696	246	57	34	119	10	25	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	1/0	c0002	696	142	24	31	71	2	13	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0003	696	6	3	3	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0004	696	5	4	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0005	696	4	3	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0006	696	2	2	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0007	696	2	2	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0008	696	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0009	696	1	1	0	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0010	696	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0011	696	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	c0012	696	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDNL_chr8_51314577_51814445	0/0	c0001	4392	27	6	7	11	1	2	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0002	4392	16	11	1	4	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0003	4392	7	0	0	7	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0004	4392	6	5	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0005	4392	5	3	2	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0006	4392	4	4	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0007	4392	3	1	1	0	1	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0008	4392	3	3	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0009	4392	2	0	0	1	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0010	4392	2	0	0	0	0	2	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0011	4392	2	1	0	0	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0012	4392	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0013	4392	2	1	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0014	4392	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/1	c0015	4392	2	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0016	4392	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0017	4392	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0018	4392	2	0	0	2	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0019	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0020	4392	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0021	4392	1	0	0	0	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0022	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	1/0	c0023	4392	1	0	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0024	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0025	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0026	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0027	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0028	4392	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0029	4392	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0030	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0031	4392	1	0	0	0	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0032	4392	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0033	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445