JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PXDNL_chr8_51314577_51814445	0/0	c0034	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0035	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0036	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0037	4392	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0038	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0039	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0040	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0041	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0042	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0043	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0044	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0045	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0046	4392	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0047	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0048	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	c0049	4392	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDN_chr2_1626887_1749515	0/0	c0001	4440	151	23	34	71	3	20	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0002	4440	47	3	8	24	5	7	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/1	c0003	4440	28	8	9	5	1	4	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0004	4440	12	11	0	0	1	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0005	4440	8	8	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0006	4440	6	6	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0007	4440	6	6	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0008	4440	6	0	0	6	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0009	4440	5	5	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0010	4440	4	4	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	1/0	c0011	4440	4	0	1	0	2	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0012	4440	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0013	4440	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0014	4440	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0015	4440	2	0	0	2	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0016	4440	2	1	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0017	4440	2	0	0	2	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0018	4440	2	2	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0019	4440	2	0	0	2	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0020	4440	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0021	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0022	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0023	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0024	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0025	4440	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0026	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0027	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0028	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0029	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0030	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0031	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0032	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0033	4440	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0034	4440	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515