JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PXDN_chr2_1626887_1749515	0/0	c0035	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0036	4440	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0037	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0038	4453	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0039	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0040	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0041	4440	1	0	0	0	0	1	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0042	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0043	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0044	4440	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0045	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0046	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0047	4440	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	c0048	4440	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXK_chr3_58327892_58431127	1/0	c0001	1737	242	66	49	95	9	22	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/1	c0002	1737	43	16	16	0	1	9	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	c0003	1737	10	10	0	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	c0004	1737	2	2	0	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	c0005	1737	1	0	0	0	0	1	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	c0006	1737	1	0	1	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	c0007	1737	1	0	0	1	0	0	copy fasta	PXK	chr3	58327892	58431127
PXMP2_chr12_132682587_132709985	1/0	c0001	588	216	63	44	75	10	23	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/1	c0002	588	92	17	27	27	5	15	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0003	588	25	1	7	13	1	3	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0004	588	10	8	2	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0005	588	2	2	0	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0006	603	1	1	0	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0007	588	1	0	0	0	0	1	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0008	588	1	0	0	1	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0009	588	1	0	0	1	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	c0010	588	1	0	0	1	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP4_chr20_33697758_33725310	0/0	c0001	639	245	63	36	109	11	26	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	1/1	c0002	639	130	27	35	40	6	20	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0003	639	4	0	0	4	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0004	639	2	0	0	2	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0005	639	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0006	639	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0007	639	1	0	0	0	1	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0008	639	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0009	639	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0010	639	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	c0011	639	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXN_chr12_120205447_120270730	0/1	c0001	3246	216	30	30	124	4	27	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0002	3246	32	20	10	0	1	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	1/0	c0003	3246	18	1	7	3	4	2	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0004	3246	15	13	2	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0005	3246	5	5	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0006	3246	4	4	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0007	3246	4	0	0	4	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0008	3246	3	3	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730