JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PXN_chr12_120205447_120270730	0/0	c0009	3246	2	0	0	1	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0010	3246	2	2	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0011	3246	2	2	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0012	3246	2	2	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0013	3246	2	2	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0014	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0015	3246	1	0	0	1	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0016	3246	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0017	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0018	3246	1	0	0	1	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0019	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0020	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0021	3246	1	0	0	0	1	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0022	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0023	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0024	3246	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0025	3246	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0026	3246	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0027	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0028	3246	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0029	3246	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	c0030	3246	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXT1_chr6_36385551_36447854	0/0	c0001	405	216	66	38	88	6	18	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	1/1	c0002	405	166	24	30	82	6	22	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	c0003	405	7	0	3	4	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	c0004	405	1	0	1	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXYLP1_chr3_141226825_141299924	1/1	c0001	1443	294	60	61	130	12	29	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0002	1443	34	6	4	19	2	3	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0003	1443	29	12	3	12	2	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0004	1443	12	9	3	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0005	1443	2	1	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0006	1443	2	0	2	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0007	1443	2	0	0	2	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0008	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0009	1443	1	0	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0010	1443	1	0	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0011	1443	1	0	1	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0013	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0014	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0015	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	c0016	1443	1	1	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PYCARD_chr16_31196486_31207760	1/1	c0001	588	350	90	73	137	16	32	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	c0002	588	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	c0003	588	1	0	1	0	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	c0004	588	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	c0005	588	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCR1_chr17_81927391_81942300	0/1	c0001	960	344	73	73	144	13	40	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0002	960	15	14	1	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0003	960	5	5	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300