JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PYCR1_chr17_81927391_81942300	1/0	c0004	960	4	2	1	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0005	960	3	0	0	3	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0006	960	2	0	1	0	1	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0007	960	2	2	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	c0008	960	1	0	0	1	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR2_chr1_225914878_225929250	1/1	c0001	963	367	62	61	186	16	40	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0002	963	69	31	15	18	1	4	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0003	963	5	1	3	0	1	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0004	963	4	0	0	4	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0005	963	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0006	963	1	0	1	0	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	c0007	963	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR3_chr8_143598210_143614575	0/0	c0001	825	157	56	25	60	0	16	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0002	825	137	5	31	71	11	19	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/1	c0003	825	120	15	20	72	1	11	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0004	825	15	10	2	0	2	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0005	825	5	5	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0006	825	2	2	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0007	825	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0008	825	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0009	825	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0010	825	1	0	0	0	0	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0011	825	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0012	825	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0013	825	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0014	825	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	c0015	825	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYDC1_chr16_31210962_31222135	1/1	c0001	270	345	92	64	139	16	32	copy fasta	PYDC1	chr16	31210962	31222135
PYDC1_chr16_31210962_31222135	0/0	c0002	250	1	0	0	1	0	0	copy fasta	PYDC1	chr16	31210962	31222135
PYDC2_chr3_191456163_191466456	0/1	c0001	294	235	67	42	85	11	29	copy fasta	PYDC2	chr3	191456163	191466456
PYDC2_chr3_191456163_191466456	1/0	c0002	294	192	21	35	117	3	15	copy fasta	PYDC2	chr3	191456163	191466456
PYDC2_chr3_191456163_191466456	0/0	c0003	294	6	5	1	0	0	0	copy fasta	PYDC2	chr3	191456163	191466456
PYDC2_chr3_191456163_191466456	0/0	c0004	294	1	1	0	0	0	0	copy fasta	PYDC2	chr3	191456163	191466456
PYDC5_chr1_158994971_159007751	1/1	c0001	342	389	91	80	171	12	33	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	c0002	342	63	3	0	51	0	9	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	c0003	342	5	5	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	c0004	342	2	1	0	0	0	1	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	c0005	342	1	0	0	0	0	1	copy fasta	PYDC5	chr1	158994971	159007751
PYGB_chr20_25243085_25303012	0/1	c0001	2532	131	37	21	53	2	17	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	1/0	c0002	2532	90	18	39	2	9	21	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0003	2532	57	1	5	47	2	2	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0004	2532	51	29	4	18	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0005	2532	7	0	1	6	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0006	2532	7	0	0	7	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0007	2532	6	3	3	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0008	2532	3	1	0	0	0	2	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0009	2532	3	1	1	0	1	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0010	2532	2	2	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0011	2532	2	0	0	2	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0012	2532	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012