JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PYGB_chr20_25243085_25303012	0/0	c0013	2532	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0014	2532	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0015	2532	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0016	2532	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0017	2532	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0018	2532	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0019	2532	1	0	1	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0020	2532	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0021	2532	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0022	2532	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0023	2532	1	0	1	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	c0024	2532	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012
PYGL_chr14_50900217_50949483	1/1	c0001	2544	153	33	27	60	11	20	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0002	2544	90	6	16	57	3	8	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0003	2544	25	1	8	13	0	3	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0004	2544	22	13	3	1	1	4	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0005	2544	20	1	4	13	0	2	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0006	2544	19	5	0	13	0	1	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0007	2544	12	9	2	0	1	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0008	2544	9	0	1	8	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0009	2544	9	4	0	4	0	1	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0010	2544	9	0	0	8	0	1	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0011	2544	4	4	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0012	2544	3	0	0	3	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0013	2544	3	3	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0014	2544	2	2	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0015	2544	2	0	2	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0016	2544	1	0	0	1	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0017	2544	1	0	0	1	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0018	2544	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0019	2544	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0020	2544	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0021	2544	1	0	1	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0022	2544	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	c0023	2544	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGM_chr11_64741398_64764974	1/1	c0001	2529	310	64	57	142	11	34	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0002	2529	11	11	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0003	2529	11	10	1	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0004	2529	8	6	2	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0005	2529	2	0	2	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0006	2529	2	0	0	2	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0007	2529	1	0	0	0	1	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0008	2529	1	0	0	0	0	1	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0009	2529	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0010	2529	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0011	2529	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	c0012	2529	1	0	0	0	0	1	copy fasta	PYGM	chr11	64741398	64764974
PYGO1_chr15_55533884_55593345	1/1	c0001	1260	390	79	63	191	13	42	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0002	1260	9	2	3	0	1	3	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0003	1260	3	3	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345