JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PYGO1_chr15_55533884_55593345	0/0	c0004	1260	3	3	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0005	1260	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0006	1260	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0008	1260	1	0	0	0	0	1	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0009	1260	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO2_chr1_154952026_154966782	1/1	c0001	1221	287	89	55	107	10	24	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0002	1221	3	0	0	3	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0003	1221	3	0	0	3	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0004	1221	2	0	0	0	0	2	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0005	1221	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0007	1221	1	0	1	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0009	1221	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0010	1221	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	c0011	1221	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYHIN1_chr1_158926552_158982059	1/1	c0001	1479	391	94	67	182	12	34	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0002	1479	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0003	1479	1	0	0	0	0	1	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0004	1479	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0005	1479	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0006	1479	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0007	1479	1	1	0	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	c0008	1479	1	0	0	0	0	1	copy fasta	PYHIN1	chr1	158926552	158982059
PYM1_chr12_55896413_55932894	0/1	c0001	615	312	58	73	130	16	34	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	1/0	c0002	615	22	20	1	0	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	c0003	615	5	0	0	5	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	c0004	615	5	0	0	5	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYROXD1_chr12_21432655_21476250	1/1	c0001	1503	407	89	67	195	16	38	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0002	1503	3	2	1	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0003	1503	2	2	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0004	1503	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0005	1503	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0006	1503	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	c0007	1503	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD2_chr10_98378568_98420182	0/0	c0001	1746	150	29	22	74	4	21	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	1/1	c0002	1746	138	6	31	80	6	13	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0003	1746	47	22	5	19	0	1	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0004	1746	36	6	11	15	1	3	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0005	1746	22	17	2	3	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0006	1746	5	5	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0007	1746	5	5	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0008	1746	3	0	0	2	0	1	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0009	1746	2	0	0	0	0	2	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0010	1746	1	0	0	1	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0011	1746	1	0	1	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0012	1746	1	0	0	1	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0013	1746	1	0	0	0	0	1	copy fasta	PYROXD2	chr10	98378568	98420182