JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASB18_chr2_236188459_236269406	0/0	c0013	1401	3	3	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0014	1401	2	2	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0015	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0016	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0017	1401	1	0	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0018	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0019	1434	1	0	0	1	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0020	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0021	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0022	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/1	c0023	1401	1	0	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0024	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0025	1401	1	1	0	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	c0026	1401	1	0	1	0	0	0	copy fasta	ASB18	chr2	236188459	236269406
ASB1_chr2_238421927_238457250	1/1	c0001	1008	335	71	61	153	13	35	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0002	1008	47	13	1	29	1	3	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0003	1008	13	0	3	9	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0004	1008	9	0	1	8	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0005	1008	7	0	0	7	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0006	1008	4	4	0	0	0	0	copy fasta	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	c0007	1008	1	0	0	0	0	1	copy fasta	ASB1	chr2	238421927	238457250
ASB2_chr14_93929166_93981570	0/0	c0001	1908	213	32	31	113	10	27	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0002	1908	68	34	8	16	2	8	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/1	c0003	1908	59	16	12	22	3	5	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0004	1908	5	0	4	1	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0005	1908	4	4	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0006	1908	2	0	1	1	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0007	1908	2	0	0	2	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0008	1908	2	0	1	1	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0009	1908	2	0	0	2	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0010	1908	2	2	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0011	1908	2	0	2	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0012	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0013	1908	1	0	1	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0014	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0015	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0016	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0017	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0018	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0019	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0020	1908	1	0	1	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0021	1908	1	0	0	0	1	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0022	1908	1	1	0	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB2_chr14_93929166_93981570	0/0	c0023	1908	1	0	1	0	0	0	copy fasta	ASB2	chr14	93929166	93981570
ASB3_chr2_53664980_53791953	1/0	c0001	1557	241	77	42	88	10	23	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0002	1557	49	1	0	39	2	7	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0003	1557	45	6	14	20	0	5	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0004	1557	5	5	0	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/1	c0005	1557	4	1	2	0	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0006	1557	2	0	0	2	0	0	copy fasta	ASB3	chr2	53664980	53791953