JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PYROXD2_chr10_98378568_98420182	0/0	c0014	1746	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0015	1746	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0016	1746	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0017	1746	1	0	0	1	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0018	1746	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	c0019	1746	1	0	0	0	1	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYURF_chr4_88515998_88528776	1/0	c0001	345	368	70	65	177	13	42	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/1	c0002	345	76	23	15	33	1	3	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	c0003	345	1	1	0	0	0	0	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	c0004	388	1	0	0	0	0	1	copy fasta	PYURF	chr4	88515998	88528776
PYY_chr17_43947733_43958940	0/1	c0001	294	200	49	29	102	7	12	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	c0002	294	151	33	39	48	9	22	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	c0003	294	12	12	0	0	0	0	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	1/0	c0004	294	1	0	0	0	0	0	copy fasta	PYY	chr17	43947733	43958940
PZP_chr12_9143840_9213395	0/0	c0001	4449	70	7	16	41	2	4	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0002	4449	42	6	10	23	2	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0003	4449	23	12	2	8	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0004	4449	17	2	10	0	2	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/1	c0005	4449	15	2	0	8	2	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0006	4449	14	0	1	6	3	4	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0007	4449	13	1	1	8	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0008	4449	13	0	0	12	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0009	4449	10	3	7	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0010	4449	7	7	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0011	4449	6	0	2	1	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0012	4449	5	0	2	0	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0013	4449	5	5	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	1/0	c0014	4449	5	4	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0015	4449	5	0	0	2	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0016	4449	5	1	2	1	1	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0017	4449	5	5	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0018	4449	5	0	2	1	0	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0019	4449	4	0	0	3	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0020	4449	3	3	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0021	4449	3	2	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0022	4449	3	1	2	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0023	4449	2	0	0	2	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0024	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0025	4449	2	0	1	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0026	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0027	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0028	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0029	4449	2	1	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0030	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0031	4449	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0032	4449	2	0	0	2	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0033	4449	2	0	0	2	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0034	4449	2	0	2	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0035	4449	1	0	0	0	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0036	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395