JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PZP_chr12_9143840_9213395	0/0	c0037	4449	1	0	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0038	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0039	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0040	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0041	4449	1	0	0	0	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0042	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0043	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0044	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0045	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0046	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0047	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0048	4449	1	0	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0049	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0050	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0051	4449	1	0	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0052	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0053	4449	1	0	0	0	1	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0054	4449	1	0	0	0	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0055	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0056	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0057	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0058	4449	1	0	0	0	1	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0059	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0060	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0061	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0062	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0063	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0064	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0065	4449	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	c0066	4449	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
QARS1_chr3_49090932_49109757	1/1	c0001	2328	233	76	49	57	12	37	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0002	2328	32	1	5	20	3	3	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0003	2328	4	4	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0004	2328	4	0	1	3	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0005	2328	2	0	2	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0006	2328	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0007	2328	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0008	2328	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0009	2328	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0010	2328	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0011	2328	1	0	0	0	1	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0012	2328	1	0	0	1	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0013	2328	1	0	0	1	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	c0014	2328	1	0	1	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QDPR_chr4_17481395_17517090	1/1	c0001	735	232	67	47	81	10	25	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	c0002	735	91	8	6	68	0	9	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	c0003	735	61	21	14	7	8	11	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	c0004	735	20	0	5	12	0	3	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	c0005	735	1	0	0	0	0	1	copy fasta	QDPR	chr4	17481395	17517090
QDPR_chr4_17481395_17517090	0/0	c0006	735	1	0	0	0	0	1	copy fasta	QDPR	chr4	17481395	17517090