JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
QKI_chr6_163409718_163583592	1/1	c0001	1026	301	96	52	109	8	34	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	c0002	1026	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QNG1_chr9_83933311_83961742	1/1	c0001	1026	381	84	55	182	16	42	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0002	1026	5	5	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0003	1026	3	3	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0004	1026	2	2	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0005	1026	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0006	1026	1	0	1	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	c0007	1026	1	1	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QPCTL_chr19_45687666_45708987	1/1	c0001	1149	340	63	64	167	10	34	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0002	1149	86	16	19	37	3	11	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0003	1149	5	4	1	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0004	1149	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0005	1149	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0006	1149	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0007	1149	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0008	1149	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0009	1149	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0010	1149	1	0	0	0	0	1	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0011	1149	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0012	1149	1	0	0	0	1	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	c0013	1149	1	1	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCT_chr2_37339630_37378322	1/1	c0001	1086	262	42	60	110	10	38	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0002	1086	71	0	9	62	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0003	1086	55	47	4	0	2	2	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0004	1086	32	0	4	25	2	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0005	1086	19	5	3	10	0	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	c0008	1086	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPRT_chr16_29674180_29703699	0/0	c0001	894	284	80	55	101	11	37	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/1	c0002	894	31	1	13	8	3	5	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	c0003	894	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	c0004	894	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	c0005	894	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	1/0	c0006	894	1	0	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	c0007	894	1	0	0	1	0	0	copy fasta	QPRT	chr16	29674180	29703699
QRFPR_chr4_121323642_121386018	1/0	c0001	1296	145	58	28	40	10	8	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0002	1296	121	10	27	67	0	17	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0003	1296	40	12	7	13	4	4	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0004	1296	22	2	1	18	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/1	c0005	1296	17	1	6	6	0	3	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0006	1296	12	0	5	7	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0007	1296	10	0	2	0	0	8	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0008	1296	5	5	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0009	1296	3	2	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0010	1296	2	2	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0011	1296	1	0	0	0	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0012	1296	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0013	1296	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018