JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
QRFPR_chr4_121323642_121386018	0/0	c0014	1296	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0015	1296	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0016	1296	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	c0017	1296	1	0	0	1	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFP_chr9_130887707_130901812	1/0	c0001	411	291	25	48	178	9	30	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/1	c0002	411	99	47	26	11	2	12	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0003	411	11	10	1	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0004	411	7	3	4	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0005	411	5	5	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0006	411	3	0	0	3	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0007	411	3	3	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0008	411	3	3	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0009	411	2	0	1	0	1	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0010	411	2	2	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0011	411	1	0	0	0	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	c0012	411	1	0	0	0	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRICH1_chr3_49024707_49099071	1/1	c0001	2331	204	77	40	50	11	24	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	c0002	2331	20	0	6	9	3	2	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	c0003	2331	1	0	0	1	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	c0004	2331	1	1	0	0	0	0	copy fasta	QRICH1	chr3	49024707	49099071
QRICH2_chr17_76269049_76313276	1/1	c0001	5664	100	13	23	43	3	16	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0002	5631	70	4	10	49	2	5	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0003	5664	32	14	13	1	0	4	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0004	5631	30	7	4	17	0	2	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0005	5664	20	0	2	10	1	7	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0006	5631	14	7	1	6	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0007	5571	11	11	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0008	5631	7	5	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0009	5631	7	0	0	7	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0010	5631	5	5	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0011	5664	4	0	0	4	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0012	5631	3	3	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0013	5631	3	1	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0014	5664	2	0	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0015	5814	2	0	0	2	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0016	5664	2	0	0	2	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0017	5571	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0018	5571	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0019	5631	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0020	5631	2	0	0	2	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0021	5631	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0022	5601	2	0	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0023	5631	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0024	5631	2	0	1	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0025	5664	1	0	0	0	1	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0026	5664	1	0	0	0	1	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0027	5664	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0028	5634	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0029	5664	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0030	5664	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276