JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
QRICH2_chr17_76269049_76313276	0/0	c0031	5664	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0032	5664	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0033	5664	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0034	5664	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0035	5664	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0036	5664	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0037	5664	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0038	5724	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0039	5631	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0040	5631	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0041	5571	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0042	5631	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0043	5631	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0044	5631	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0045	5664	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0046	5664	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0047	5631	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0048	5631	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0049	5664	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0050	5631	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0051	5631	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0052	5691	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0053	5601	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0054	5631	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0055	5631	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0056	5631	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0057	5631	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0058	5631	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0059	5631	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	c0060	5631	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRSL1_chr6_106624578_106673417	1/0	c0001	1587	257	44	41	145	5	21	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/1	c0002	1587	92	16	24	33	8	10	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0003	1587	43	20	6	15	1	1	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0004	1587	16	0	0	14	0	2	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0005	1587	4	4	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0006	1587	3	2	1	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0007	1587	2	0	2	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0008	1587	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0009	1587	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0010	1637	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0011	1587	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	c0012	1587	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QSER1_chr11_32887811_32985270	0/0	c0001	5595	131	29	33	46	6	17	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0002	5595	30	25	4	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0003	5595	16	1	5	5	2	3	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/1	c0004	5595	13	3	2	2	0	5	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0005	5595	9	9	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0006	5595	8	8	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0007	5595	6	0	3	0	1	2	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0008	5595	4	4	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270