JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
QSER1_chr11_32887811_32985270	0/0	c0009	5613	4	4	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0010	5595	2	0	0	2	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0011	5595	2	2	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0012	5595	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0013	5595	1	0	0	1	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0014	5595	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0015	5595	1	0	0	0	1	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0016	5595	1	0	1	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0017	5595	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0018	5595	1	0	0	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0019	5595	1	0	0	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	1/0	c0020	5595	1	0	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0021	5598	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	c0022	5598	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSOX1_chr1_180149869_180209030	0/1	c0001	2244	159	19	35	74	9	21	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	1/0	c0002	2244	62	14	7	29	1	10	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0003	2244	47	0	1	44	1	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0004	2244	35	23	4	0	4	4	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0005	2244	22	6	5	9	0	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0006	2244	10	0	5	0	3	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0007	2244	9	0	0	9	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0008	2244	8	7	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0009	2244	6	0	0	6	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0010	2244	5	0	4	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0011	2244	4	3	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0012	2244	4	4	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0013	2244	4	4	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0014	2244	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0015	2244	2	1	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0016	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0017	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0018	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0019	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0020	2244	1	0	0	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0021	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0022	2244	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0023	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	c0024	2244	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX2_chr9_136201333_136250812	1/0	c0001	2097	124	54	26	28	1	14	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/1	c0002	2097	120	17	21	60	4	17	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0003	2097	57	2	3	43	3	6	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0004	2097	43	0	14	17	6	6	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0005	2097	12	9	2	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0006	2097	10	0	0	10	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0007	2097	4	0	1	2	0	1	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0008	2097	2	2	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0009	2097	2	2	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0010	2097	2	0	0	0	2	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0011	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0012	2097	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812