JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
QSOX2_chr9_136201333_136250812	0/0	c0013	2097	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0014	2097	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0015	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0016	2097	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0017	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0018	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0019	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0020	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0021	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0022	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0023	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0024	2097	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0025	2097	1	0	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	c0026	2097	1	0	0	1	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QTRT1_chr19_10696439_10718365	1/1	c0001	1212	387	75	67	186	15	42	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	c0002	1212	14	8	5	0	1	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	c0003	1212	1	0	0	1	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	c0004	1212	1	1	0	0	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	c0005	1212	1	0	0	1	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT2_chr3_114051737_114093422	1/1	c0001	1248	414	83	78	190	16	45	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0002	1248	11	10	1	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0003	1248	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0004	1248	1	0	0	0	0	1	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0005	1248	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0006	1248	1	0	1	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	c0007	1248	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
R3HCC1L_chr10_98129657_98249897	0/1	c0001	2337	207	46	27	107	6	20	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0002	2337	98	8	20	51	4	15	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0003	2337	40	11	10	7	7	5	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0004	2337	7	7	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	1/0	c0005	2337	3	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0006	2337	3	0	0	3	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0007	2337	3	2	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0008	2337	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0009	2337	2	0	1	0	1	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0010	2337	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0011	2337	2	0	2	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0012	2337	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0013	2337	2	1	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0014	2337	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0015	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0016	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0017	2337	1	0	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0018	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0019	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0020	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0021	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0022	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0023	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0024	2337	1	0	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897