JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
R3HCC1L_chr10_98129657_98249897	0/0	c0025	2337	1	0	0	0	0	1	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0026	2337	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	c0027	2337	1	0	0	0	0	1	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1_chr8_23283108_23301279	0/0	c0001	1323	226	25	24	152	5	20	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0002	1323	99	27	25	38	3	6	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	1/1	c0003	1323	60	19	9	11	5	14	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0004	1323	37	2	17	10	3	5	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0005	1323	11	7	1	0	0	3	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0006	1323	10	10	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0007	1323	4	4	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0008	1323	3	3	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0009	1323	3	0	1	2	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0010	1323	2	0	0	0	2	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0011	1323	2	0	0	2	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0012	1323	2	0	0	0	0	2	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0013	1323	2	0	2	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0014	1353	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0015	1323	1	0	1	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0016	1323	1	1	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0017	1323	1	1	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0018	1323	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0019	1323	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0020	1323	1	0	1	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0021	1323	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0022	1323	1	1	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0023	1323	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	c0024	1323	1	0	1	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HDM1_chr2_135526484_135730269	0/1	c0001	3405	99	53	9	29	0	7	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0002	3405	53	10	7	27	0	9	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0003	3405	48	6	11	24	0	7	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	1/0	c0004	3405	13	1	9	0	0	2	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0005	3406	4	3	0	1	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0006	3406	4	0	1	2	0	1	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0007	3406	3	0	1	2	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0008	3405	3	0	0	3	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0009	3405	2	2	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0010	3405	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0011	3406	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	c0012	3405	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM2_chr12_57248764_57436043	1/1	c0001	2973	163	37	18	83	4	19	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0002	2973	132	26	24	57	6	19	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0003	2973	16	13	3	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0004	2974	4	1	1	2	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0005	2973	4	4	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0006	2973	4	3	1	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0007	2974	3	1	0	2	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0008	2973	3	0	2	0	0	1	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0009	2973	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0010	2974	1	0	1	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0011	2973	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043