JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
R3HDM2_chr12_57248764_57436043	0/0	c0012	2973	1	0	0	0	0	1	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0013	2973	1	0	0	1	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0014	2973	1	0	0	1	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	c0015	2973	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM4_chr19_891503_918219	1/1	c0001	807	349	83	74	136	18	36	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0002	807	51	1	0	40	0	10	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0003	807	13	1	10	0	0	2	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0004	807	7	6	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0005	807	4	4	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0006	807	4	3	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0007	807	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0008	807	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0009	807	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	c0010	807	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDML_chr20_44332043_44356238	1/1	c0001	762	314	60	42	168	10	32	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0002	762	82	20	13	36	3	10	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0003	762	17	5	8	0	3	1	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0004	762	12	6	1	5	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0005	762	3	3	0	0	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0006	762	1	0	1	0	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0007	762	1	0	0	0	0	1	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0008	762	1	0	1	0	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0009	762	1	0	0	0	0	1	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0010	762	1	0	0	1	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	c0011	774	1	0	0	0	0	1	copy fasta	R3HDML	chr20	44332043	44356238
RAB10_chr2_26029084_26142454	1/1	c0001	603	208	65	47	58	8	28	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	c0002	603	2	2	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	c0003	603	1	0	1	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	c0004	603	1	1	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB11A_chr15_65864491_65896989	1/1	c0001	651	354	84	60	156	14	38	copy fasta	RAB11A	chr15	65864491	65896989
RAB11B_chr19_8385360_8409434	1/0	c0001	657	281	64	59	104	14	39	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/1	c0002	657	130	25	19	72	4	9	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0003	657	8	8	0	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0004	657	4	3	1	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0005	657	2	0	0	2	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0006	657	1	0	1	0	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0007	657	1	0	0	1	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	c0008	700	1	0	0	1	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11FIP1_chr8_37853618_37904497	0/1	c0001	3852	79	12	17	35	2	12	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0002	3852	40	12	9	11	4	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0003	3852	27	2	7	12	2	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	1/0	c0004	3852	25	5	7	0	2	10	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0005	3852	9	0	3	2	0	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0006	3852	6	1	2	0	3	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0007	3852	6	6	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0008	3852	6	6	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0009	3852	5	0	0	5	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0010	3852	5	0	0	5	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0011	3852	5	1	4	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	c0012	3852	3	0	0	3	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497