JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASB3_chr2_53664980_53791953	0/0	c0007	1557	1	0	0	0	0	1	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0008	1557	1	0	0	1	0	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0009	1557	1	0	0	0	1	0	copy fasta	ASB3	chr2	53664980	53791953
ASB3_chr2_53664980_53791953	0/0	c0010	1557	1	0	0	0	1	0	copy fasta	ASB3	chr2	53664980	53791953
ASB4_chr7_95480943_95545233	1/1	c0001	1281	370	83	76	149	14	46	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	c0002	1281	14	13	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	c0003	1281	1	1	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	c0004	1281	1	0	0	1	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	c0005	1281	1	0	1	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB4_chr7_95480943_95545233	0/0	c0006	1281	1	1	0	0	0	0	copy fasta	ASB4	chr7	95480943	95545233
ASB5_chr4_176208673_176274222	0/0	c0001	990	214	48	30	106	11	19	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	1/1	c0002	990	172	36	32	76	7	19	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0003	990	6	0	6	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0004	990	6	0	0	6	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0005	990	3	3	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0006	990	2	0	2	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0007	990	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0008	990	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0009	990	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0010	990	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0011	990	1	1	0	0	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0012	990	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	c0013	990	1	0	0	1	0	0	copy fasta	ASB5	chr4	176208673	176274222
ASB6_chr9_129629605_129647151	0/0	c0001	1266	183	46	30	74	9	24	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/1	c0002	1266	182	29	34	90	8	20	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	1/0	c0003	1266	35	6	5	18	1	4	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0004	1266	5	5	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0005	1266	4	4	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0006	1266	3	2	1	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0007	1266	3	0	0	3	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0010	1211	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0012	1266	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0013	1266	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	c0014	1266	1	1	0	0	0	0	copy fasta	ASB6	chr9	129629605	129647151
ASB7_chr15_100597589_100656701	1/1	c0001	957	350	81	64	146	17	40	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0002	957	5	5	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0003	957	3	3	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0004	957	3	3	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0005	957	3	0	3	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0006	957	2	1	1	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0007	957	1	1	0	0	0	0	copy fasta	ASB7	chr15	100597589	100656701
ASB7_chr15_100597589_100656701	0/0	c0008	957	1	0	0	0	1	0	copy fasta	ASB7	chr15	100597589	100656701
ASB8_chr12_48142789_48162515	1/1	c0001	867	432	94	70	205	16	45	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	c0002	867	8	1	7	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	c0003	867	3	3	0	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	c0004	867	3	0	2	0	0	1	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	c0005	867	2	0	0	2	0	0	copy fasta	ASB8	chr12	48142789	48162515