JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB11FIP2_chr10_117999916_118051941	0/0	c0011	1539	1	0	0	0	0	1	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	c0012	1539	1	0	0	0	0	1	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP3_chr16_420649_528011	0/0	c0001	2271	219	57	36	101	5	20	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/1	c0002	2271	41	13	14	4	6	3	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0003	2271	10	3	0	7	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0004	2271	6	0	0	6	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0005	2271	3	3	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0006	2271	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0007	2271	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0008	2271	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0009	2271	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0010	2271	1	0	0	0	1	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0011	2271	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0012	2271	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0013	2271	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0014	2271	1	0	0	0	0	1	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0015	2271	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0016	2271	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0017	2271	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0018	2271	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	c0019	2271	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP4_chr17_31386675_31543211	1/0	c0001	1914	221	62	47	73	8	30	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0002	1914	33	4	4	20	2	3	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/1	c0003	1914	17	1	11	2	2	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0004	1914	7	1	4	2	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0005	1914	5	0	0	5	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0006	1914	5	5	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0007	1914	4	4	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0008	1914	3	0	0	0	0	3	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0009	1914	2	0	2	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0010	1914	2	2	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0011	1914	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0012	1914	1	0	0	1	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0013	1914	1	0	0	0	0	1	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0014	1914	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0015	1914	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0016	1914	1	0	0	1	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0017	1914	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0018	1914	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0019	1914	1	0	0	0	0	1	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0020	1914	1	0	1	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	c0021	1914	1	0	1	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP5_chr2_73068382_73117948	0/0	c0001	3969	157	29	12	101	4	11	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/1	c0002	3975	139	23	39	49	9	18	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0003	3969	18	13	4	0	0	1	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	1/0	c0004	3975	17	5	7	2	0	2	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0005	3978	7	6	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0006	3972	5	5	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0007	3975	5	0	0	5	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0008	3969	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948