JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB11FIP5_chr2_73068382_73117948	0/0	c0009	3972	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0010	3975	2	0	0	2	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0011	3975	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0012	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0013	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0014	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0015	3969	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0016	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0017	3972	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0018	3972	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0019	3972	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0020	3969	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0021	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0022	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0023	3975	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0024	3975	1	0	0	0	1	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0025	3975	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0026	3963	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0027	3969	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0028	3975	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0029	3975	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0030	3975	1	0	0	0	0	1	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0031	3975	1	0	0	0	0	1	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0032	3975	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	c0033	3969	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB12_chr18_8604437_8644383	1/1	c0001	1023	398	96	69	177	14	40	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	c0002	1023	2	0	2	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	c0003	1023	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	c0004	1023	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	c0005	1023	1	0	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB13_chr1_153976650_153991339	1/1	c0001	612	402	84	73	187	14	42	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	c0002	612	3	0	0	3	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	c0003	612	1	0	0	1	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	c0004	612	1	0	1	0	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	c0005	612	1	0	0	1	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB14_chr9_121173133_121206869	1/1	c0001	648	384	88	72	172	16	34	copy fasta	RAB14	chr9	121173133	121206869
RAB15_chr14_64940816_64977336	1/1	c0001	639	257	55	51	96	15	38	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	c0002	639	124	37	4	76	3	4	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	c0003	639	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB17_chr2_237569326_237595734	1/0	c0001	639	184	15	36	95	13	24	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0002	639	55	13	8	23	0	11	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0003	639	39	2	4	33	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0004	639	33	29	4	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0005	639	32	4	1	24	0	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/1	c0006	639	18	8	8	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0007	639	17	8	1	4	1	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0008	639	12	3	1	5	0	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0009	639	9	0	6	0	0	3	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0010	639	4	0	0	3	0	1	copy fasta	RAB17	chr2	237569326	237595734