JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB33A_chrX_130166962_130189870	1/1	c0001	714	307	74	50	136	13	32	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0002	714	3	0	3	0	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0003	714	2	2	0	0	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0004	715	1	0	0	1	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0005	713	1	0	0	1	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0006	714	1	1	0	0	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	c0007	714	1	1	0	0	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33B_chr4_139449121_139481609	1/1	c0001	690	402	98	62	180	18	42	copy fasta	RAB33B	chr4	139449121	139481609
RAB34_chr17_28709284_28722868	1/1	c0001	780	330	82	63	128	12	43	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0002	780	7	0	3	4	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0003	780	3	3	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0004	780	3	2	1	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0005	780	1	0	1	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0006	780	1	1	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	c0007	780	1	0	0	0	0	1	copy fasta	RAB34	chr17	28709284	28722868
RAB35_chr12_120090099_120121753	1/1	c0001	606	377	81	76	167	11	40	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	c0002	606	24	17	6	0	1	0	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	c0003	606	13	0	0	13	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB36_chr22_23140477_23170663	0/0	c0001	804	218	52	39	98	5	24	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0002	804	98	4	12	62	6	14	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	1/1	c0003	804	61	33	17	2	2	5	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0004	804	8	0	8	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0005	804	3	3	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0006	804	2	2	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0007	804	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0008	804	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0009	804	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0010	804	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0011	804	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0012	804	1	0	0	0	1	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0013	804	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	c0014	804	1	0	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB37_chr17_74732256_74752335	1/1	c0001	672	425	91	80	192	16	44	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	c0002	672	3	1	2	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	c0003	672	2	2	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	c0004	672	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	c0005	672	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB38_chr11_88108251_88180443	0/1	c0001	636	315	81	59	127	14	33	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	1/0	c0002	636	100	15	19	55	0	10	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	c0003	636	2	1	0	0	0	1	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	c0004	636	2	0	2	0	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	c0005	636	1	1	0	0	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB39A_chr11_107923448_107968482	1/1	c0001	654	386	85	65	174	18	42	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0002	654	15	0	2	11	0	2	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0003	654	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0004	654	1	1	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0005	654	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0006	654	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	c0007	654	1	0	1	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39B_chrX_155253235_155269491	1/1	c0001	642	291	72	55	123	13	26	copy fasta	RAB39B	chrX	155253235	155269491