JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB39B_chrX_155253235_155269491	0/0	c0002	641	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB3A_chr19_18191784_18209042	1/1	c0001	663	271	88	47	96	6	32	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0002	663	59	1	21	19	9	9	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0003	663	35	2	4	25	0	4	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0004	663	1	0	0	0	1	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0005	663	1	0	0	0	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0006	663	1	0	0	1	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0007	663	1	0	0	1	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	c0008	663	1	1	0	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3B_chr1_51902956_51995700	1/1	c0001	660	47	30	6	6	0	3	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	c0002	660	14	11	2	0	0	1	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	c0003	660	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3C_chr5_58578075_58864394	1/1	c0001	684	219	59	46	74	8	30	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	c0002	684	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3D_chr19_11317068_11344657	1/1	c0001	660	363	53	71	188	16	33	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0002	660	15	14	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0003	660	14	13	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0004	660	13	13	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0005	660	3	3	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0006	660	2	1	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0007	660	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0008	660	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0009	660	1	0	0	0	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	c0010	660	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3GAP1_chr2_135047292_135175710	0/0	c0001	2946	176	51	26	78	1	20	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0002	2946	58	1	7	40	1	9	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	1/1	c0003	2946	23	2	12	0	2	5	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0004	2946	4	4	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0005	2946	4	4	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0006	2946	4	4	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0007	2946	3	3	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0008	2946	2	2	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0009	2946	1	0	0	1	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0010	2946	1	0	1	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0011	2946	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0012	2946	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0013	2946	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	c0014	2946	1	0	0	1	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP2_chr1_220143293_220277453	1/1	c0001	4182	310	70	56	147	7	28	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0002	4182	24	1	5	10	1	7	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0003	4182	18	4	2	10	0	2	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0004	4182	8	7	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0005	4182	2	0	0	0	0	2	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0006	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0007	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0008	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0009	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0010	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0011	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0012	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453