JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB3GAP2_chr1_220143293_220277453	0/0	c0013	4182	1	0	0	0	0	1	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0014	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0015	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0016	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0017	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0018	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0019	4166	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0020	4182	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	c0021	4182	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3IL1_chr11_61892301_61922566	1/1	c0001	1149	203	61	43	79	7	11	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0002	1149	75	0	4	61	2	8	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0003	1149	34	0	19	4	2	9	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0004	1149	24	13	6	0	3	2	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0005	1149	13	13	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0006	1149	9	2	1	2	0	4	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0007	1149	8	0	0	8	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0008	1149	6	0	1	0	2	3	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0009	1149	5	0	0	4	0	1	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0010	1149	4	4	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0011	1149	2	1	1	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0012	1149	2	2	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0013	1149	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0014	1149	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0015	1149	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0016	1149	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0017	1149	1	0	1	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0018	1149	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	c0019	1149	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IP_chr12_69733860_69828199	1/1	c0001	1383	381	83	66	181	14	35	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0002	1383	6	0	6	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0003	1383	4	4	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0004	1383	4	0	0	4	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0005	1383	3	2	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0006	1383	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0007	1383	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0008	1383	1	0	0	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB40AL_chrX_102932272_102943300	1/1	c0001	837	203	36	35	101	10	19	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0002	837	64	24	4	26	0	10	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0003	837	25	0	3	22	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0004	837	8	8	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0005	837	4	4	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0006	837	2	0	0	0	0	2	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0007	837	1	0	0	0	1	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0008	837	1	1	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0009	837	1	1	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0010	837	1	0	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0011	837	1	0	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0012	837	1	1	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0013	837	1	0	0	1	0	0	copy fasta	RAB40AL	chrX	102932272	102943300