JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB40AL_chrX_102932272_102943300	0/0	c0014	839	1	0	0	1	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0015	837	1	0	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	c0016	837	1	0	0	0	0	1	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40A_chrX_103494130_103524489	1/1	c0001	834	211	44	33	103	5	24	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0002	834	23	4	11	0	6	2	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0003	834	17	17	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0004	834	6	6	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0005	834	5	4	1	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0006	834	2	0	0	2	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0007	837	1	1	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	c0008	834	1	0	0	1	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40B_chr17_82649973_82703698	1/1	c0001	837	322	63	72	124	18	43	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0002	837	10	10	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0003	837	2	0	0	0	0	2	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0004	837	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0005	837	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0006	837	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	c0007	837	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40C_chr16_585066_634268	1/1	c0001	846	346	92	70	124	12	46	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	c0002	846	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	c0003	846	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	c0004	846	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	c0005	846	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB41_chrX_70277172_70290002	1/1	c0001	669	291	75	48	119	13	34	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0002	669	15	0	0	15	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0003	669	3	0	0	3	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0004	669	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0005	676	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0006	669	1	0	1	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0007	670	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	c0008	668	1	1	0	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB42_chr1_28587265_28600449	0/0	c0001	657	372	88	79	144	17	44	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	c0002	657	2	2	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	c0003	657	2	1	0	0	1	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	c0004	657	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	c0005	657	1	0	1	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB43_chr3_129082572_129126804	1/1	c0001	639	269	79	61	92	10	25	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	c0002	639	31	4	0	22	0	5	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	c0003	639	2	0	0	2	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	c0004	639	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	c0005	639	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB44_chr6_36692826_36738184	0/0	c0001	3066	160	18	35	76	11	20	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0002	3066	58	0	12	34	1	11	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	1/0	c0003	3066	53	2	18	22	4	6	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0004	3066	50	17	5	19	1	8	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0005	3084	36	21	0	15	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/1	c0006	3084	18	7	6	4	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0007	3066	6	0	0	6	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0008	3066	4	0	0	4	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0009	3084	4	4	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184