JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB44_chr6_36692826_36738184	0/0	c0010	3084	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0011	3102	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0012	3084	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0013	3066	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0014	3066	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0015	3084	2	2	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0016	3066	2	0	0	0	0	2	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0017	3066	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0018	3084	2	2	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0019	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0020	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0021	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0022	3066	1	0	0	0	0	1	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0023	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0024	3066	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0025	3066	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0026	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0027	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0028	3102	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0029	3084	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0030	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0031	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0032	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0033	3066	1	0	0	0	1	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0034	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0035	3102	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	c0036	3066	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB4A_chr1_229266111_229310894	1/1	c0001	657	399	93	74	174	12	44	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	c0002	657	1	1	0	0	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4B_chr19_40773247_40801942	1/1	c0001	642	362	73	55	174	16	42	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	c0002	642	19	16	3	0	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	c0003	642	1	0	0	1	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	c0004	642	1	1	0	0	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	c0005	642	1	0	0	1	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB5A_chr3_19942097_19990175	0/1	c0001	648	212	62	41	67	11	30	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	1/0	c0002	648	130	26	23	63	3	14	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	c0003	648	2	0	0	0	2	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	c0004	648	2	1	1	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	c0005	648	2	1	1	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5B_chr12_55969078_56001683	1/1	c0001	648	381	80	82	170	16	31	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	c0002	648	1	0	0	0	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5C_chr17_42119979_42159989	1/1	c0001	651	182	44	41	62	9	24	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	c0002	651	109	42	13	36	7	11	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	c0003	651	12	6	0	5	0	1	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	c0004	651	2	2	0	0	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	c0005	651	1	0	0	1	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5IF_chr20_36600779_36617557	1/1	c0001	390	397	94	80	171	14	36	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	c0002	390	1	0	0	1	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB6A_chr11_73670638_73766074	1/1	c0001	627	352	88	56	152	12	42	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	c0002	627	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074