JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB6A_chr11_73670638_73766074	0/0	c0003	627	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6B_chr3_133819235_133900882	1/1	c0001	627	307	92	56	112	16	29	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	c0002	627	78	1	16	48	2	11	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	c0003	627	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6C_chr2_129974666_129987738	0/1	c0001	765	199	30	38	102	5	23	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	1/0	c0002	765	95	5	20	46	4	19	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0003	765	47	19	0	26	0	2	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0004	765	24	23	1	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0005	765	12	10	2	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0006	765	11	0	5	5	1	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0007	765	8	8	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0008	765	2	0	0	2	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0009	765	2	2	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0010	765	1	0	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	c0011	765	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6D_chr2_131355492_131369168	1/1	c0001	765	395	75	74	188	16	40	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0002	765	10	9	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0003	765	6	6	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0004	765	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0005	765	2	0	0	2	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0006	765	2	2	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	c0007	765	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB7A_chr3_128721183_128819798	1/1	c0001	624	307	82	67	107	14	35	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	c0002	624	5	0	3	0	2	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	c0003	624	1	0	0	1	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	c0004	624	1	0	0	0	0	1	copy fasta	RAB7A	chr3	128721183	128819798
RAB7B_chr1_205971740_206008395	1/1	c0001	600	320	90	73	98	16	41	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	c0002	600	5	5	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	c0003	600	2	2	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	c0004	600	1	0	0	0	0	1	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	c0005	600	1	0	1	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	c0006	600	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB8A_chr19_16106889_16139234	1/1	c0001	624	247	61	43	105	7	29	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	c0002	624	142	29	31	60	5	17	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	c0003	624	1	0	0	1	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8B_chr15_63184606_63272776	1/1	c0001	624	252	73	45	101	8	23	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	c0002	624	109	9	24	59	4	13	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	c0003	624	11	10	1	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB9A_chrX_13684128_13715504	1/1	c0001	606	332	70	60	157	11	32	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	c0002	606	1	1	0	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	c0003	606	1	1	0	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9B_chrX_103817327_103837257	1/1	c0001	606	326	69	57	153	13	32	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	c0002	606	4	4	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	c0003	606	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RABAC1_chr19_41951683_41964321	1/1	c0001	558	363	73	76	160	16	36	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	0/0	c0002	558	4	4	0	0	0	0	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	0/0	c0003	558	1	1	0	0	0	0	copy fasta	RABAC1	chr19	41951683	41964321
RABEP1_chr17_5277284_5391340	0/0	c0001	2589	136	26	24	70	5	11	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0002	2589	69	13	3	45	0	8	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	1/0	c0003	2589	57	12	23	5	4	12	copy fasta	RABEP1	chr17	5277284	5391340