JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASB8_chr12_48142789_48162515	0/0	c0006	867	1	0	0	1	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB8_chr12_48142789_48162515	0/0	c0007	867	1	0	1	0	0	0	copy fasta	ASB8	chr12	48142789	48162515
ASB9_chrX_15238987_15275083	1/1	c0001	885	331	76	58	150	11	34	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	c0002	885	2	2	0	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	c0003	885	2	0	0	2	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASB9_chrX_15238987_15275083	0/0	c0004	885	1	0	1	0	0	0	copy fasta	ASB9	chrX	15238987	15275083
ASCC1_chr10_72091032_72221276	1/1	c0001	1074	164	51	37	43	4	27	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0002	1074	40	21	1	15	0	3	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0003	1074	4	4	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0004	1074	2	2	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0005	1074	2	2	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0007	1074	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0008	1074	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC1_chr10_72091032_72221276	0/0	c0009	1074	1	1	0	0	0	0	copy fasta	ASCC1	chr10	72091032	72221276
ASCC2_chr22_29783611_29843274	1/1	c0001	2274	216	62	55	70	9	18	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0002	2274	61	4	0	52	0	5	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0003	2274	45	6	9	22	1	7	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0004	2274	18	0	3	12	0	3	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0005	2274	9	2	5	1	1	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0006	2274	4	3	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0007	2274	4	4	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0008	2274	3	3	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0009	2274	2	2	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0010	2274	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0011	2274	1	0	0	1	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0012	2274	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0013	2274	1	0	0	0	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0014	2274	1	0	0	0	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0015	2274	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0016	2274	1	1	0	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0017	2274	1	0	1	0	0	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0018	2274	1	0	0	0	0	1	copy fasta	ASCC2	chr22	29783611	29843274
ASCC2_chr22_29783611_29843274	0/0	c0019	2274	1	0	0	0	1	0	copy fasta	ASCC2	chr22	29783611	29843274
ASCC3_chr6_100503194_100886329	0/1	c0001	6609	87	20	18	32	5	11	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0002	6609	70	23	7	37	0	3	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0003	6609	60	3	14	29	7	7	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0004	6609	28	6	5	13	0	4	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0005	6609	12	6	4	0	0	2	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0006	6609	10	0	0	8	1	1	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0007	6609	5	5	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0008	6609	5	0	1	4	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0009	6609	3	0	2	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0010	6609	3	2	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0011	6609	3	3	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0012	6609	2	2	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0013	6609	2	0	0	2	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0014	6609	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0015	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0016	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329