JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RABEP1_chr17_5277284_5391340	0/0	c0004	2589	50	17	8	23	0	2	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/1	c0005	2589	29	21	3	0	3	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0006	2589	3	0	3	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0007	2589	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0008	2589	1	0	0	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0009	2589	1	0	0	0	1	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0010	2589	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0011	2589	1	0	0	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0012	2589	1	0	0	0	1	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0013	2589	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	c0014	2589	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP2_chr16_28899421_28930238	1/1	c0001	1710	332	56	63	161	14	36	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0002	1710	24	23	1	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0003	1710	3	3	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0004	1710	3	3	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0005	1710	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0006	1710	1	0	0	1	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0007	1710	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	c0008	1710	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEPK_chr9_125195542_125239161	1/1	c0001	1119	294	59	55	135	9	34	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0002	1119	44	13	4	22	2	3	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0003	1119	13	1	2	9	0	1	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0004	1119	13	1	6	0	2	4	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0005	1119	7	6	1	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0006	1119	7	6	1	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0007	1119	5	4	1	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0008	1119	2	0	0	2	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0009	1119	1	0	0	1	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0010	1119	1	0	0	1	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	c0011	1119	1	0	0	0	1	0	copy fasta	RABEPK	chr9	125195542	125239161
RABGAP1L_chr1_174154520_175000308	0/0	c0001	3156	209	50	41	78	13	27	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0002	3156	43	5	3	28	1	6	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0003	3156	12	12	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0004	3156	3	0	0	3	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0005	3156	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0006	3156	1	0	0	0	0	1	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0007	3156	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0008	3156	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	c0009	3156	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1_chr9_122936020_123109866	1/1	c0001	3210	228	72	51	82	8	13	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0002	3210	21	0	1	16	2	2	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0003	3210	5	0	0	5	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0004	3210	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0005	3210	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0006	3210	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	c0007	3210	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGEF1_chr7_66735733_66816464	1/1	c0001	1476	396	90	72	183	12	37	copy fasta	RABGEF1	chr7	66735733	66816464
RABGEF1_chr7_66735733_66816464	0/0	c0002	1476	2	2	0	0	0	0	copy fasta	RABGEF1	chr7	66735733	66816464
RABGEF1_chr7_66735733_66816464	0/0	c0003	1476	1	0	0	0	0	1	copy fasta	RABGEF1	chr7	66735733	66816464
RABGEF1_chr7_66735733_66816464	0/0	c0004	1476	1	0	0	1	0	0	copy fasta	RABGEF1	chr7	66735733	66816464