JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RABGGTA_chr14_24260538_24276597	0/1	c0001	1704	247	60	43	106	9	28	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	1/0	c0002	1704	144	14	29	76	7	17	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0003	1704	8	8	0	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0004	1704	4	4	0	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0005	1704	2	2	0	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0006	1704	2	2	0	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0007	1704	1	0	1	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0008	1704	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0010	1704	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0011	1704	1	0	1	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0012	1704	1	0	0	0	0	1	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	c0013	1704	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTB_chr1_75781256_75800086	0/0	c0001	996	327	96	62	109	14	46	copy fasta	RABGGTB	chr1	75781256	75800086
RABGGTB_chr1_75781256_75800086	1/1	c0002	996	71	1	12	54	0	2	copy fasta	RABGGTB	chr1	75781256	75800086
RABGGTB_chr1_75781256_75800086	0/0	c0003	996	4	0	0	4	0	0	copy fasta	RABGGTB	chr1	75781256	75800086
RABGGTB_chr1_75781256_75800086	0/0	c0004	996	1	0	0	1	0	0	copy fasta	RABGGTB	chr1	75781256	75800086
RABGGTB_chr1_75781256_75800086	0/0	c0005	996	1	1	0	0	0	0	copy fasta	RABGGTB	chr1	75781256	75800086
RABIF_chr1_202873282_202894149	1/1	c0001	372	415	79	78	200	16	40	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	c0002	372	6	6	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	c0003	372	2	2	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	c0004	372	1	1	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	c0005	372	1	1	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	c0006	372	1	1	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABL2A_chr2_113622266_113648392	1/1	c0001	690	373	76	69	168	17	41	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0002	689	24	0	0	23	0	1	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0003	689	17	0	5	8	1	3	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0004	690	7	7	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0005	690	6	6	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0006	690	4	4	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0007	690	3	3	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0008	690	1	0	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	c0009	690	1	0	0	0	0	1	copy fasta	RABL2A	chr2	113622266	113648392
RABL2B_chr22_50762506_50788636	1/1	c0001	690	465	93	80	229	18	43	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0002	690	2	0	2	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0003	690	2	0	0	2	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0004	690	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0005	690	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0006	690	1	0	0	0	0	1	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0007	690	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	c0008	690	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL3_chr3_120679938_120747516	1/1	c0001	711	351	76	68	151	14	40	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	c0002	711	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	c0003	711	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	c0004	711	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL6_chr9_136802948_136846187	0/1	c0001	2190	149	32	30	69	4	13	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	1/0	c0002	2190	50	7	17	21	1	3	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0003	2190	26	2	3	18	1	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0004	2190	18	5	5	3	4	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0005	2190	18	1	10	5	1	1	copy fasta	RABL6	chr9	136802948	136846187