JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RABL6_chr9_136802948_136846187	0/0	c0006	2190	17	9	1	1	0	6	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0007	2190	6	0	0	4	0	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0008	2190	4	4	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0009	2190	4	0	0	4	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0010	2190	4	0	0	4	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0011	2190	3	3	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0012	2190	2	1	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0013	2190	2	0	0	0	0	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0014	2190	2	0	0	2	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0015	2190	2	0	0	0	0	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0016	2190	2	2	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0017	2190	2	1	1	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0018	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0019	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0020	2190	1	0	1	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0021	2190	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0022	2190	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0023	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0024	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0025	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0026	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0027	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0028	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0029	2190	1	0	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0030	2190	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0031	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0032	2190	1	0	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0033	2190	1	0	0	0	1	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0034	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0035	2190	1	0	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	c0036	2190	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RAC1_chr7_6369527_6408967	1/1	c0001	579	387	91	72	165	14	43	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	c0002	579	1	0	0	0	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	c0003	579	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	c0004	579	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	c0005	579	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	c0006	579	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC2_chr22_37220270_37249269	1/1	c0001	579	306	52	64	138	16	34	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0002	579	56	25	3	23	0	5	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0003	579	52	7	5	36	1	3	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0004	579	26	8	4	9	1	4	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0005	579	4	4	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0006	579	1	0	0	1	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0007	579	1	0	0	1	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0008	579	1	1	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	c0009	579	1	1	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC3_chr17_82026678_82039204	1/1	c0001	579	385	90	70	166	14	43	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	c0002	579	17	4	4	4	0	5	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	c0003	579	2	0	2	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RACGAP1_chr12_49984162_50030494	1/1	c0001	1899	292	63	68	127	4	28	copy fasta	RACGAP1	chr12	49984162	50030494