JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RACGAP1_chr12_49984162_50030494	0/0	c0002	1899	26	26	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	c0003	1899	3	3	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	c0004	1899	1	1	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	c0005	1899	1	0	0	1	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	c0006	1899	1	1	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACK1_chr5_181231897_181248906	1/1	c0001	954	417	90	73	192	16	44	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	c0002	954	7	6	1	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	c0003	954	3	3	0	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	c0004	954	1	1	0	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	c0005	954	1	0	0	1	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	c0006	954	1	0	0	1	0	0	copy fasta	RACK1	chr5	181231897	181248906
RAD17_chr5_69364818_69419801	0/1	c0001	2013	262	67	48	118	6	22	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0002	2013	76	2	19	45	2	8	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0003	2013	8	8	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0004	2013	3	0	2	0	0	1	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0005	2013	2	2	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0006	2013	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0007	2013	1	0	0	0	0	1	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0008	2013	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0009	2013	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0010	2013	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0011	2013	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0012	2013	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	c0013	2013	1	0	1	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD18_chr3_8872075_8968472	0/1	c0001	1488	173	59	38	52	2	21	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	1/0	c0002	1488	149	22	19	97	4	6	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0003	1488	8	8	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0004	1488	5	0	0	5	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0005	1488	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0006	1488	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0007	1488	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0008	1488	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0010	1488	1	0	1	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0011	1488	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0012	1488	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0013	1488	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0014	1488	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0015	1488	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	c0016	1488	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD1_chr5_34900260_34920504	1/1	c0001	849	401	92	72	181	16	38	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0002	849	19	0	4	9	1	5	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0003	849	3	0	3	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0004	849	3	0	1	0	1	1	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0005	849	2	0	0	2	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0006	849	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0007	849	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0008	849	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	c0009	849	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD21L1_chr20_1221044_1260876	1/0	c0001	1668	169	9	33	100	8	18	copy fasta	RAD21L1	chr20	1221044	1260876