JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAD21L1_chr20_1221044_1260876	0/0	c0002	1668	102	55	22	2	7	16	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/1	c0003	1668	40	1	6	30	1	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0004	1668	15	8	5	1	1	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0005	1668	12	0	4	8	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0006	1668	8	5	1	0	1	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0007	1668	4	1	0	3	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0008	1668	3	0	2	0	0	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0009	1668	2	2	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0010	1668	2	1	1	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0011	1668	2	0	0	2	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0012	1668	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0013	1668	1	0	0	1	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0014	1668	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0015	1668	1	0	0	0	0	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	c0016	1668	1	0	0	1	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21_chr8_116840934_116879776	1/1	c0001	1896	365	91	54	161	16	41	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0002	1896	58	0	19	32	2	5	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0003	1896	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0004	1896	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0005	1896	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0006	1896	1	1	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	c0007	1896	1	0	1	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD23A_chr19_12940862_12958642	1/1	c0001	1092	322	73	71	126	13	37	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0002	1092	34	15	6	10	3	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0003	1092	3	3	0	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0004	1092	1	1	0	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0005	1092	1	0	1	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0006	1092	1	0	0	0	0	1	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0007	1092	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	c0008	1092	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23B_chr9_107278279_107337189	1/0	c0001	1230	257	81	48	84	13	30	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/1	c0002	1230	71	1	19	39	1	10	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	c0003	1230	15	14	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	c0004	1230	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	c0005	1230	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	c0006	1230	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD50_chr5_132551977_132651349	1/1	c0001	3939	227	56	35	103	7	24	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0002	3939	16	14	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0003	3939	12	10	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0004	3939	4	3	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0005	3939	2	0	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0006	3939	2	0	0	0	0	2	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0007	3939	2	2	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0008	3939	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0009	3939	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0010	3939	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0011	3939	1	0	0	0	1	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0012	3939	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0013	3939	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0014	3939	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349