JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAD54L2_chr3_51533719_51673660	0/0	c0008	4404	1	0	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0009	4404	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0010	4404	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0011	4404	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0012	4404	1	0	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0013	4404	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0014	4404	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L_chr1_46242763_46283473	1/1	c0001	2244	250	79	57	83	10	19	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0002	2244	58	1	6	35	3	13	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0003	2244	6	6	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0004	2244	3	0	0	3	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0005	2336	2	0	0	2	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0006	2244	2	2	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0007	2244	2	0	0	2	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0008	2244	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0009	2336	1	0	0	0	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0010	2244	1	0	0	0	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0011	2244	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0013	2244	1	0	0	0	1	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0014	2244	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0015	2244	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	c0016	2244	1	0	1	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD9A_chr11_67386986_67403410	1/1	c0001	1176	187	15	42	88	11	29	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0002	1176	127	71	9	45	1	1	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0003	1176	28	9	17	2	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0004	1176	10	0	0	10	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0005	1176	2	0	0	0	0	2	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0007	1176	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0008	1176	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	c0009	1176	1	0	0	1	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9B_chr12_110497331_110538556	1/1	c0001	1254	238	67	51	74	14	30	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0002	1254	36	14	0	18	0	4	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0003	1254	4	3	0	1	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0004	1254	2	1	1	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0005	1254	2	2	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RADIL_chr7_4792055_4888716	0/1	c0001	3228	76	10	16	35	7	7	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0002	3228	39	1	7	18	5	8	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0003	3228	15	1	7	1	1	5	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0004	3228	15	1	0	5	0	9	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0005	3228	14	12	0	0	2	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0006	3228	13	2	3	6	0	2	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0007	3228	8	8	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0008	3228	7	0	0	5	0	2	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0009	3228	6	0	0	6	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0010	3237	6	3	3	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0011	3228	6	1	1	4	0	0	copy fasta	RADIL	chr7	4792055	4888716